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PBISC-Diffusion

Noise → Cells → Genes

ctx2048 · E12 · EMA · Pseudobulk → 50 steps

Architecture · Figure 1

From bulk to cells

Explore the run ↓

Pseudobulk → conditioned denoiser ↻ → generated cells

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4,096 cells

Generated · 4,096Ground truth · 4,362PBMC5 + Other

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Recording & downloads

PCA · xₜ / UMAP · x̂₀ · Fixed axes

Noisy state in PCA and predicted final expression in UMAP, with 4,096 generated and 4,362 real cells
Selected steps

One cell

Monocyte · 1 cell2,980 genesGround truth · Nearest single cell

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Recording & downloads

One tile = one gene · Endpoint-matched comparison

One generated Monocyte’s noisy state and the individual real cell nearest to its final expression
Selected steps

SLE vs HC

HC · 12 donorsSLE · 30 donorsIFNα · 61 genes

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Recording & downloads

63,000 generated cells · One dot = one gene

Recorded SLE–HC gene differences and fixed real-sample DEG; HC higher in blue, SLE higher in red
Selected steps · Ground truth inset

Methods & data

Recording metadata · Statistics · Downloads
Disease contrast · SLE vs HCIFNα set · 61 / 97 genes measured≥20 cells / donor / type · ≥5 donors / groupOther · Insufficient donors

MSigDB · HALLMARK_INTERFERON_ALPHA_RESPONSE · CC BY 4.0